YangLab@FJMU


Submitted publications:

  • Systematic Mining of gut microbiota biomarkers for IBD, Yuchen Zhang, Wenkai Lai, Meiling Wang, Shirong Lai, Qing Liu, Qi Luo, Lijun Dou, Fenglong Yang, bioRxiv 2024.10.10.617522; doi: https://doi.org/10.1101/2024.10.10.617522
  • Gut microbial metabolic flux disorder in hypertension, Lai Wenkai, Yuchen Zhang, Meiling Wang, Shirong Lai, Qing Liu, Qi Luo, Feng long Yang,bioRxiv 2024.10.09.617349; doi: https://doi.org/10.1101/2024.10.09.617349
  • Deciphering the Gut Microbiome’s Influence on Depression: A Community-Level Constraint-Based Metabolic modelling Approach, Zhang Yuchen, Wenkai Lai, Wang Meiling, Lai Shirong, Liu Qing, Luo Qi, Yang Fenglong, bioRxiv 2024.10.10.617513; doi: https://doi.org/10.1101/2024.10.10.617513

Peer-reviewed publications:

2024

  • Baixue Qiao, Shuda Wang, Mingjun Hou, Haodi Chen, Zhengwenyang Zhou, Xueying Xie, Shaozi Pang, Chunxue Yang*, Fenglong Yang*, Quan Zou*, Shanwen Sun*, Identifying nucleotide-binding leucine-rich repeat receptor and pathogen effector pairing using transfer-learning and bilinear attention network, Bioinformatics, 2024, btae581 (WebServer)

  • Lei Ji, Xiaoyu Chang, Leilei Wang, Xiaowen Fu, Wenkai Lai, Liwen Zheng, Qi Li, Yingna Xing, Zhongfeng Yang, Yuyao Guan*, Fenglong Yang*, Insights into the biodegradation of pentachlorobiphenyl by Microbacterium paraoxydans: proteomic and metabolomic studies, Frontiers in Microbiology Volume 15, June 2024 【中科院二区】

  • Meiling Wang†, Zhaoqi Song†, Shirong Lai, Furong Tang, Lijun Dou*, Fenglong Yang*, Depression-associated gut microbes, metabolites and clinical trials, Frontiers in Microbiology, Volume 15, January 2024 【中科院二区，Google Scholar citations: 8 times】

2023

  • Haoran Sun†, Zhaoqi Song†, Qiuming Chen, Meiling Wang, Furong Tang, Lijun Dou, Quan Zou*, Fenglong Yang*, MMiKG: a knowledge graph-based platform for path mining of microbiota–mental diseases interactions, Briefings in Bioinformatics, Volume 24, Issue 6, November 2023, bbad340(WebServer) 【中科院一区，Google Scholar citations: 6 times】

  • Juntao Chen, Jiannan Chao, Huan Liu, Fenglong Yang, Quan Zou, Furong Tang, WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies, Briefings in Bioinformatics, Volume 24, Issue 4, July 2023, bbad190

  • Wang, Z.†, Gao, J.†, Kan, H., Huang, Y., Tang, F., Li, W.*, & Yang, F*.(2023). ResNet for Histopathologic Cancer Detection, the Deeper, the Better?. Journal of Data Science and Intelligent Systems 【Google Scholar citations: 11 times】


2022

  • Furong Tang, Jiannan Chao, Yanming Wei, Fenglong Yang, Yixiao Zhai, Lei Xu, Quan Zou, HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences, Molecular Biology and Evolution, Volume 39, Issue 8, August 2022, msac166

2021

  • Fenglong Yang, Quan Zou, DisBalance: a platform to automatically build balance-based disease prediction models and discover microbial biomarkers from microbiome data, Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbab094 【中科院一区，Google Scholar citations: 15 times】

  • Fenglong Yang, Quan Zou, Bo Gao, GutBalance: a server for the human gut microbiome-based disease prediction and biomarker discovery with compositionality addressed, Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbaa436 【中科院一区，Google Scholar citations: 19 times】

  • Lijun Dou†, Fenglong Yang†, Lei Xu, Quan Zou, A comprehensive review of the imbalance classification of protein post-translational modifications, Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbab089 【中科院一区，Google Scholar citations: 36 times】

2020

  • Fenglong Yang, Quan Zou, mAML: an automated machine learning pipeline with a microbiome repository for human disease classification, Database, Volume 2020, 2020, baaa050 【2020年中科院一区，Google Scholar citations: 31 times】


👉 Publications before 2020


Last modified date: 2024.12.17